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Total result(s) found: 15
  • Characterization of piRNAs across postnatal development in mouse brain
    Ghosheh Y., Seridi L., Ryu T., Takahashi H., Orlando V., Carninci P., Ravasi T.
    Sci Rep. 2016 Apr 26;6:25039. doi: 10.1038/srep25039
Keywords:
piRNAs, Mouse brain
  • ​The constrained maximal expression level owing to haploidy shapes gene content on the mammalian X chromosome
    Hurst L.D., Ghanbarian A.T., Forrest A.R.; FANTOM consortium, Huminiecki L.
    PLoS Biol. 2015 Dec 18;13(12):e1002315. doi: 10.1371/journal.pbio.1002315
Keywords:
X chromosome, Genes
  • Application of gene expression trajectories initiated from ErbB receptor activation highlights the dynamics of divergent promoter usage
    Carbajo D., Magi S., Itoh M., Kawaji H., Lassmann T., Arner E., Forrest A.R., Carninci P., Hayashizaki Y., Daub C.O.; FANTOM consortium, Okada-Hatakeyama M., Mar J.C.
    PLoS One. 2015 Dec 14;10(12):e0144176. doi: 10.1371/journal.pone.0144176
Keywords:
Cell death, Cell migration, Cell proliferation, Cell stimulation, Enzyme regulation, Focal adhesion, Gene activity, Gene expression profiling
  • ​The statistical geometry of transcriptome divergence in cell-type evolution and cancer
    Liang C., FANTOM Consortium, Forrest A.R., Wagner G.P.
    Nat Commun. 2015 Jan 14;6:6066. doi: 10.1038/ncomms7066
Keywords:
Cancer cell, Gene expression profiling, Geometry, Statistical model, Transcriptomics
  • Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells
    Arner E., Daub C.O., Vitting-Seerup K., Andersson R., Lilje B., Drabløs F., Lennartsson A., Rönnerblad M., Hrydziuszko O., Vitezic M., Freeman T.C., Alhendi A.M., Arner P., Axton R., Baillie J.K., Beckhouse A., Bodega B., Briggs J., Brombacher F., Davis M., Detmar M., Ehrlund A.
    Science. 2015 Feb 27;347(6225):1010-4. doi: 10.1126/science.1259418. Epub 2015 Feb 12
Keywords:
Mammal, cells, Signaling, Human cell
  • ​Discovery of molecular markers to discriminate corneal endothelial cells in the human body
    M. Yoshihara, H. Ohmiya, S. Hara, S. Kawasaki, FANTOM consortium, Y. Hayashizaki, M. Itoh, H. Kawaji, M. Tsujikawa, K. Nishida
    PLoS One, 10(5): e0129412, Mar 25, 2015
Keywords:
Molecular markers, Cells, Human body
  • ​A promoter-level mammalian expression atlas
    The FANTOM Consortium and the RIKEN PMI and CLST (DGT)
    Nature, 2014 Mar 27;507(7493):462-70. doi: 10.1038/nature13182. PMID: 24670764
Keywords:
Gene expression, Genetic analysis, Genome, Human, Mammal
  • ​Ceruloplasmin is a novel adipokine which is overexpressed in adipose tissue of obese subjects and in obesity-associated cancer cells
    Arner E., Forrest A.R., Ehrlund A., Mejhert N., Itoh M., Kawaji H., Lassmann T., Laurencikiene J., Rydén M., Arner P., FANTOM Consortium
    PLoS One, 2014 Mar 27;9(3):e80274. doi: 10.1371/journal.pone.0080274. eCollection 2014. PMID: 24676332
Keywords:
Angiogenesis, Cancer cell, CP gene, Human tissue, Non insulin dependent diabetes mellitus, Nucleotide sequence, Obesity
  • ​Differential roles of epigenetic changes and Foxp3 expression in regulatory T cell-specific transcriptional regulation
    Morikawa H., Ohkura N., Vandenbon A., Itoh M., Nagao-Sato S., Kawaji H., Lassmann T., Carninci P., Hayashizaki Y., Forrest A.R., Standley D.M., Date H., Sakaguchi S. FANTOM Consortium
    Proc Natl Acad Sci U S A. 2014 Apr 8;111(14):5289-94. doi:10.1073/pnas.1312717110. Epub 2014 Mar 27. PMID:24706905
Keywords:
Cell culture, Cell selection, Chromatin structure, Cluster analysis, Controlled study, CpG island, DNA methylation, Epigenetics
  • ​CCL2 enhances pluripotency of human induced pluripotent stem cells by activating hypoxia related genes
    Hasegawa Y., Tang D., Takahashi N., Hayashizaki Y., Forrest A.R., FANTOM Consortium, Suzuki H.
    Sci Rep. 2014 Jun 24;4:5228. doi: 10.1038/srep05228.PMID:24957798
Keywords:
Cells, Stem cells, Genes, Hypoxia related genes
  • ​Repetitive elements dynamics in cell identity programming, maintenance and disease
    Bodega B., Orlando V.
    Curr Opin Cell Biol. 2014 Dec;31:67-73. doi: 10.1016/j.ceb.2014.09.002. Epub 2014 Sep 19. Review. PMID: 25240822
Keywords:
Embryo development, Epigenetics, Gene activation, Gene function, Gene repression, Gene structure
  • PcG-mediated higher-order chromatin structures modulate replication programs at the Drosophila BX-C
    Lo Sardo F., Lanzuolo C., Comoglio F., De Bardi M., Paro R., Orlando V.
    PLoS Genet. 2013;9(2):e1003283. doi: 10.1371/journal.pgen.1003283. Epub 2013 Feb 21. PMID: 23437006
Keywords:
BX C gene, Chromatin structure, Drosophila, Enzyme activity, Epigenetics, Gene replication, Gene structure, Insect cell, Insect genetics, Nonhuman, Nucleotide sequence, Protein expression, Protein function
  • ​RNA-interference components are dispensable for transcriptional silencing of the drosophila bithorax-complex
    Cernilogar F.M., Burroughs A.M., Lanzuolo C., Breiling A., Imhof A., Orlando V.
    PLoS One. 2013 Jun 13;8(6):e65740. doi: 10.1371/journal.pone.0065740. Print 2013.PMID: 23785447
Keywords:
Animal cell, Bioinformatics, Chromatin structure, DNA responsive element, Drosophila, Gene cluster, Gene locus, Gene repression, Histone methylation, Protein depletion, RNA interference
  • ​Concerted epigenetic signatures inheritance at PcG targets through replication
    Lanzuolo C., Lo Sardo F., Orlando V.
    Cell Cycle. 2012 Apr 1;11(7):1296-300. doi: 10.4161/cc.19710. Epub 2012 Apr 1 PMID: 22421150
Keywords:
Cell cycle S phase, Chromatin, Controlled study, Epigenetics, Nonhuman, Protein methylation
  • ​Memories from the polycomb group proteins
    Lanzuolo C., Orlando V.
    Annu Rev Genet. 2012;46:561-89. doi: 10.1146/annurev-genet-110711-155603. Epub 2012 Sep 17. Review. PMID: 22994356
Keywords:
Chromosomes, Drosophila, Enzyme activation, Epigenesis, Genetic, Histone-lysine N-methyltransferase